{"id":3062,"date":"2026-01-09T08:33:13","date_gmt":"2026-01-09T08:33:13","guid":{"rendered":"https:\/\/cvsc.upcebu.edu.ph\/?post_type=project&#038;p=3062"},"modified":"2026-02-18T08:33:36","modified_gmt":"2026-02-18T08:33:36","slug":"the-complete-chloroplast-genome-of-cynometra-cebuensis-f-seid-fabaceae-a-critically-endangered-endemic-plant-from-cebu-philippines","status":"publish","type":"project","link":"https:\/\/cvsc.upcebu.edu.ph\/index.php\/project\/the-complete-chloroplast-genome-of-cynometra-cebuensis-f-seid-fabaceae-a-critically-endangered-endemic-plant-from-cebu-philippines\/","title":{"rendered":"The complete chloroplast genome of\u00a0Cynometra cebuensis\u00a0F. Seid. (Fabaceae), a critically endangered endemic plant from Cebu, Philippines"},"content":{"rendered":"<p>[et_pb_section fb_built=&#8221;1&#8243; theme_builder_area=&#8221;post_content&#8221; _builder_version=&#8221;4.27.5&#8243; _module_preset=&#8221;default&#8221;][et_pb_row column_structure=&#8221;1_3,2_3&#8243; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; custom_padding=&#8221;40px|||||&#8221; global_colors_info=&#8221;{}&#8221; theme_builder_area=&#8221;post_content&#8221;][et_pb_column type=&#8221;1_3&#8243; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221; theme_builder_area=&#8221;post_content&#8221;][et_pb_heading title=&#8221;The complete chloroplast genome of Cynometra cebuensis F. Seid. (Fabaceae), a critically endangered endemic plant from Cebu, Philippines&#8221; _builder_version=&#8221;4.27.5&#8243; _module_preset=&#8221;default&#8221; title_font=&#8221;|700|on||||||&#8221; title_text_color=&#8221;gcid-body-color&#8221; title_font_size=&#8221;41px&#8221; custom_margin=&#8221;|-828px|25px|||&#8221; hover_enabled=&#8221;0&#8243; global_colors_info=&#8221;{%22gcid-body-color%22:%91%22title_text_color%22%93}&#8221; theme_builder_area=&#8221;post_content&#8221; sticky_enabled=&#8221;0&#8243;][\/et_pb_heading][et_pb_image src=&#8221;http:\/\/cvsc.upcebu.edu.ph\/wp-content\/uploads\/2026\/02\/Estrada-Mitochondrial-DNA.webp&#8221; title_text=&#8221;Estrada-Mitochondrial DNA&#8221; _builder_version=&#8221;4.27.5&#8243; _module_preset=&#8221;default&#8221; hover_enabled=&#8221;0&#8243; box_shadow_style=&#8221;preset2&#8243; global_colors_info=&#8221;{}&#8221; theme_builder_area=&#8221;post_content&#8221; sticky_enabled=&#8221;0&#8243;][\/et_pb_image][\/et_pb_column][et_pb_column type=&#8221;2_3&#8243; _builder_version=&#8221;4.27.4&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221; theme_builder_area=&#8221;post_content&#8221;][et_pb_text _builder_version=&#8221;4.27.5&#8243; _module_preset=&#8221;default&#8221; text_font_size=&#8221;15px&#8221; text_line_height=&#8221;1.1em&#8221; custom_padding=&#8221;118px|||||&#8221; hover_enabled=&#8221;0&#8243; global_colors_info=&#8221;{}&#8221; theme_builder_area=&#8221;post_content&#8221; sticky_enabled=&#8221;0&#8243;]<\/p>\n<p><strong>Lead Researcher(s): <\/strong>Jeremaiah L. Estrada, Claudette I. Canonigo, Kristine Joyce O. Qui\u00f1ones, and Renerio P. Gentallan Jr.<br \/><strong>Status:<\/strong> Published<\/p>\n<p style=\"text-align: justify;\"><span style=\"font-weight: 400;\"><strong>Abstract\/summary:<\/strong> <span>Cynometra cebuensis F. Seid., a critically endangered species endemic to Cebu, Philippines, lacks published genomic data. We present its first complete chloroplast genome, assembled using Illumina paired-end sequencing. The 158,474 bp genome includes a large single-copy (86,821 bp), small single-copy (19,329 bp), and two inverted repeats (26,162 bp each), with a GC content of 36.4%. It contains 125 genes: 80 protein-coding, 37 tRNA, and eight rRNA. Phylogenetic analysis places C. cebuensis in a monophyletic group within Detarioideae, closely related to C. lenticellata, providing essential data for its identification, phylogeny, and conservation.<\/span><\/span><\/p>\n<p><b>Keywords:<\/b><\/p>\n<ul class=\"c-article-subject-list\">\n<li class=\"c-article-subject-list__subject\"><span style=\"color: #3366ff;\">Conservation<\/span><\/li>\n<li class=\"c-article-subject-list__subject\"><span style=\"color: #3366ff;\">Detarioideae<\/span><\/li>\n<li class=\"c-article-subject-list__subject\"><span style=\"color: #3366ff;\">endemism<\/span><\/li>\n<li class=\"c-article-subject-list__subject\"><span style=\"color: #3366ff;\">phylogeny<\/span><\/li>\n<li class=\"c-article-subject-list__subject\"><span style=\"color: #3366ff;\">taxonomy<\/span><\/li>\n<\/ul>\n<p>[\/et_pb_text][et_pb_button button_text=&#8221;Downloadable PDF&#8221; _builder_version=&#8221;4.27.5&#8243; _module_preset=&#8221;default&#8221; theme_builder_area=&#8221;post_content&#8221; button_url=&#8221;https:\/\/doi.org\/10.1080\/23802359.2025.2544681&#8243; url_new_window=&#8221;on&#8221; custom_button=&#8221;on&#8221; button_text_color=&#8221;#8A1538&#8243; hover_enabled=&#8221;0&#8243; sticky_enabled=&#8221;0&#8243;][\/et_pb_button][\/et_pb_column][\/et_pb_row][\/et_pb_section]<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Lead Researcher(s): Jeremaiah L. Estrada, Claudette I. Canonigo, Kristine Joyce O. Qui\u00f1ones, and Renerio P. Gentallan Jr.Status: Published Abstract\/summary: Cynometra cebuensis F. Seid., a critically endangered species endemic to Cebu, Philippines, lacks published genomic data. We present its first complete chloroplast genome, assembled using Illumina paired-end sequencing. The 158,474 bp genome includes a large single-copy [&hellip;]<\/p>\n","protected":false},"author":7,"featured_media":0,"template":"","meta":{"_et_pb_use_builder":"on","_et_pb_old_content":"","_et_gb_content_width":"","footnotes":""},"project_category":[37,34],"project_tag":[],"class_list":["post-3062","project","type-project","status-publish","hentry","project_category-journals-books-and-reports","project_category-recent-publications"],"_links":{"self":[{"href":"https:\/\/cvsc.upcebu.edu.ph\/index.php\/wp-json\/wp\/v2\/project\/3062","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/cvsc.upcebu.edu.ph\/index.php\/wp-json\/wp\/v2\/project"}],"about":[{"href":"https:\/\/cvsc.upcebu.edu.ph\/index.php\/wp-json\/wp\/v2\/types\/project"}],"author":[{"embeddable":true,"href":"https:\/\/cvsc.upcebu.edu.ph\/index.php\/wp-json\/wp\/v2\/users\/7"}],"version-history":[{"count":2,"href":"https:\/\/cvsc.upcebu.edu.ph\/index.php\/wp-json\/wp\/v2\/project\/3062\/revisions"}],"predecessor-version":[{"id":3066,"href":"https:\/\/cvsc.upcebu.edu.ph\/index.php\/wp-json\/wp\/v2\/project\/3062\/revisions\/3066"}],"wp:attachment":[{"href":"https:\/\/cvsc.upcebu.edu.ph\/index.php\/wp-json\/wp\/v2\/media?parent=3062"}],"wp:term":[{"taxonomy":"project_category","embeddable":true,"href":"https:\/\/cvsc.upcebu.edu.ph\/index.php\/wp-json\/wp\/v2\/project_category?post=3062"},{"taxonomy":"project_tag","embeddable":true,"href":"https:\/\/cvsc.upcebu.edu.ph\/index.php\/wp-json\/wp\/v2\/project_tag?post=3062"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}